National Taiwan University

Ecoinformatics

Chih-hao Hsieh
https://ecoinformaticsc.webnode.tw

Research Field

Ocean Science

Introduction

Chih-hao (Zac) Hsieh is a Professor of Oceanography with a joint appointment at the Institute of Ecology and Evolutionary Biology at National Taiwan University. He served as Director of the Institute of Oceanography from August 2020 to July 2023.

Chih-hao Hsieh’s academic journey began with an MS/BA in Zoology from National Taiwan University, followed by a PhD in Oceanography from the University of California-San Diego. Since joining the faculty of National Taiwan University in 2007, he has played a major role in research and teaching.

Chih-hao Hsieh’s research prowess is evidenced by his authorship of over 130 research articles, several of which have been published in prestigious journals such as Nature and Science. His research focuses on developing robust methods for time series analysis in dynamical systems, with applications in environmental management, economics, epidemiology, ecology, medical sciences, and neural sciences. In addition, he conducted field sampling and experiments in aquatic systems to study ecosystem dynamics.

We conduct field sampling in the oceans and lakes. We carry out sample analysis using imaging instruments, microscopy, molecular biology such as high-troughput sequencing, chemical and biochemical analysis. We developed bioinformtics pipeline as well as advanced statistical methods for data analysis. We also engage in developing mathematical models. Our objectvies are to achieve understandings of ecosystem processes and the undelying mechanisms.


Research Topics

Theoretical ecology; Time series analysis of dynamical systems; Fisheries, Biological oceanography; plankton ecology, aquatic ecology 



 


Honor

Ministry of Science and Technology Outstanding Research Award (2019) 科技部傑出研究獎

National Taiwan University teaching award (2018) 

Ministry of Science and Technology Outstanding Research Award (2015) 科技部傑出研究獎

Biwako Prize for Ecology (2015)

Ten Outstanding Young Persons of Taiwan (2014) 十大傑出青年

Young Scientist Research Innovation Award. Foundation for the Advancement of Outstanding Scholarship (2013) 財團法人傑出人才發展基金會年輕學者創新獎

National Science Council Dr. Da-Yu Wu Memorial Award for outstanding young researcher (2010) 吳大猷獎

National Taiwan University teaching award (2010) 


Educational Background

2001-2006          Ph.D. (Biological Oceanography), Scripps Institution of Oceanography, University of California-San Diego, USA

1999-2001          M.Sc. (Zoology), National Taiwan University, Taipei, Taiwan

1993-1997          B.Sc. (Zoology), National Taiwan University, Taipei, Taiwan


2 Vacancies

Job Description

High-throughput meta-barcoding experiments and bioinformatics to study microbial foodwebs. In particular, massive eDNA of microbial samples cross space and time will be taken and analyzed to understand the potentail trophic interactions in microbial foodwebs. The objectives are to 1) quantify diversity and taxonomic compositons of microbes across trophic levels (e.g., 16S and 18S),  2) infer trophic interactions using statistical approaches, and 3) conduct incubation experiments (e.g., feeding experiments) to quantify the trophic processes.  The visiting student will be trained with skills of molecular biology, bioinformatics, and advanced data analysis.

Preferred Intern Education Level

Students of a master degree in science or engineering are preferred.

Skill sets or Qualities

For job 1, good programming (e.g. R, Matlab, etc) skill is pre-reqired.

For job 2, basic experience of DNA extraction and molecualr biology is pre-reqired.